NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151517_1284

Scaffold Ga0151517_1284


Overview

Basic Information
Taxon OID3300011113 Open in IMG/M
Scaffold IDGa0151517_1284 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)20074
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010302Metagenome / Metatranscriptome305N
F017131Metagenome242Y
F024955Metagenome203Y
F038086Metagenome166N
F048773Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0151517_128413F038086AGGAGMAITTINNISNTINIEDIQSTKTLSNIKPFDSTLSNIAFGALIAATTLANPSTIVDLKPTILNIVKVDYAKVITPTSVLPFRLTLSNIGIEGYDPANPPGIGIQIIGFSNYIL*
Ga0151517_128419F048773AGGMPTSFDSDGKAAYVYNLADDTWYQVSGKTDISGTFEWTGLHTHLSTLTTADHFNAEKGMNNFLNPAARDAAIPSPAAGTTCLIRQDSGGATVNSLQVYIGGSWTTVLPSPVGQTDKILKSNGTISAWEQAPDAMTQVILMMGA*
Ga0151517_128420F024955GAGGMAVENIGNLVPTKIPALIDDANIQDALKAYHYGSYTFDTAETNTANLLNPSMAYTINDLQEQIDDNATLEEAARDISRASTTAPTAAAFTAFSATIPDGYIWLDKDSSAGVGYYAATSVYTATAPSTNLANGLIWIKKGSSPIEMYVYNGDTSTFDQVI*
Ga0151517_128421F010302N/AVVDVLLNTEDVVVLGPPDSVDVLVDIGPQGTRGNKFIVGSGEPNALTSSGVLLGTTLILNDMYINTAPGANYGYMYQYISQAGGNTWVQVLKINPAIYSAVETVSFTSGSGSITIPISNIVTVSGSPLTASNFSVQFQIEGPNPIASSMEIPALAGAGTNLVINFDAVQYSGGSWSALSGSKTVHIFISIV*
Ga0151517_128422F017131AGGAGGMAFPGSYNFNYYRGDTAEFVIRPKTANGDAFDLTGFNSDFFIATARGETGTQYEAQAVVDGSADTITCTILPEVGRELAAGNYVYDVQIDSSASEIYTVLTGTITVTDDITGAV*
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