Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1550 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1550 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	13133
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (76.32%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

13133

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (76.32%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F004132	Metagenome / Metatranscriptome	451	Y
F005348	Metagenome / Metatranscriptome	403	Y
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F012455	Metagenome / Metatranscriptome	280	Y
F014849	Metagenome / Metatranscriptome	259	Y
F034573	Metagenome	174	Y
F084217	Metagenome / Metatranscriptome	112	N
F084233	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_15501	F012455	GGA	MLNEIKNKIIRIQELRRSNAATPIPNKKKYSRKVKHKNAK*
Ga0151517_155010	F000808	GGAG	VEYNYALTTSYDGKLIHTLRVSDMLTAVDAWNKCVDYGTAKEYATYNLSDLTGKMYTKTFYTNGEVVIK*
Ga0151517_155013	F003393	GAG	MKTLEKDDIIPIMDYHKVDMLTAGQLMVDDNILVDNEVVSITEIVSLADGYILEIINDFGERDTLEVTEYQQFDLMMLK*
Ga0151517_155019	F004132	AGGA	MSEVMTQEQLSVPYNPNLLVTYKAIPNTYSAPESPTFMTDKVTDIEWQLHHGRLNADTLKERNADLRWLEDQIVEWYDPNYSKEDVLQALAQKFELNPTKEIEVQGTVSFSGTINVPLSEIADFDVSNVTIDVELSSYEYDADLNVDDIQVEDHY*
Ga0151517_155022	F084233	N/A	MTLNVEIYEMDYSCSPGGVNCWEVSIDEWCVSDFKTAGDAIQYVLDKYPYDELNLNVKSLNWYFKEFANEYAV*
Ga0151517_155028	F007112	AGGA	MHTLHYIAVEANSKQEAFDKVVVSLQPNEDGYRIGDWSDWHVVGGGRWSTNAQKSKNFMDGYNHDSTDVIGYAENKEKFQEVVKNILKFRSQSMNRNIVEIKTDKFISQLVDYASEGGRGPWNGDNLMNVYSIKQAAEMLMGSWTCDSGFYDLQEHISEFEYLDERLDKPELAMRQYLVPVDFHF*
Ga0151517_155030	F006844	GGA	MATWDVEIIFEPTGTYMNFEYETDTEDEDDIFNEITNQISIIPERTDA*
Ga0151517_155032	F034573	AGGAG	MYRISRAKRTTNEEKVATAIGKLLSDFYLDLEKVGYYLARATPYLIYRRALEVLESAKFQEDKIEHDRLQYDQNKLP*
Ga0151517_15504	F084217	AGG	MSDYLNYLDEVYTDLVAEYGENITLAYHEANIKEM*
Ga0151517_15506	F005348	AGGA	MINSVMTFPCDTCDNKGYIFWGNDLDYDVEPCSCKDFTLGTLFTTKEAD*
Ga0151517_15508	F014849	AGGA	MLTNLDLLAIIIALSSSMFVMFLFYKQNVAQQKEIRYLRNLKKLK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1550

Overview

Ecosystem & Geography

Associated Families

Sequences