NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151517_1670

Scaffold Ga0151517_1670


Overview

Basic Information
Taxon OID3300011113 Open in IMG/M
Scaffold IDGa0151517_1670 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)11505
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054000Metagenome140Y
F057330Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0151517_16703F054000AGGAMAYNPADYEARRRGYTQQYAATGAMNAYANFLAQQRGNRERQGIMEQYNKAQPQVVAGYSRRGMVGPNVRSGLFARGLQDFAKQRARTFSEFDQGLQEQQRSYDLGEAQRLEAFKNQLADMESEKAQTIADAARQLYARRAGAI*
Ga0151517_16708F057330GAGMRPVIVLWDDAYSEDEWMSIEHYNPKPETPNISIGYIVAYNNDYVHIASTIDQDGGNCCGIMAIPYDMIVYVAPLQILSEAKMYGDKEEFEQYLQGKFAQRSEVYEFIEPAEISLETNPEPSV*
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