NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10012

Scaffold Ga0151515_10012


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10012 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)64129
Total Scaffold Genes99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)88 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008750Metagenome / Metatranscriptome328Y
F012101Metagenome283Y
F065546Metagenome127Y
F071151Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0151515_100121F065546AGGMTTITGTQIDDFQLLTLRQMLKLEIRGMTRSRSPSAYSILKKMGYTGTRESVLAQLDDRRREILGLA*
Ga0151515_1001236F008750AGGAGMRKIRFMELMKEPFKKPTPLEMIAAELSDAHLEKLTAETAVEYAQSIVDYNVTRIARLNLRLDEYKTGDK*
Ga0151515_1001242F071151GGAGGMNCCNANGVCDQGKDCPVRKQRLKEINDAYANGHKDAQLDDPIDDLADTFKALLTMMTAVLGVWIVCLIIWGK*
Ga0151515_1001261F012101GAGMAGVNMAQKNVVAPRLPAATQQYDPALINQLANVLRIYFNQLDNAGPMVASTQRNGTDIIAGLSFFPTGTSTTPSLPTETDLANLRVGDIYYDTSANNVLKVKV*
Ga0151515_1001299F065546AGGMTTITGTQIDDFQLLTLRRMLKLEIRGMTRSRSPSAYSILKKMGYTGTRESVLA
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