Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10013 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10013 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	63616
Total Scaffold Genes	96 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	76 (79.17%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

63616

Total Scaffold Genes

96 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

76 (79.17%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F007581	Metagenome	348	Y
F010016	Metagenome	309	Y
F012016	Metagenome	284	Y
F029418	Metagenome	188	Y
F031359	Metagenome	182	Y
F033405	Metagenome	177	Y
F043777	Metagenome	155	Y
F046899	Metagenome	150	Y
F080877	Metagenome	114	Y
F088231	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1001313	F007581	GGAG	MEKITNMLFPVIVSAIAWLLTSMSSIQADLINIKSKMPILITEQGVPTDSPVSADQRAKLKEELKLQIAELSIRVRLLEEHEKTRGYK*
Ga0151515_1001333	F010016	GAG	MGMVMKKTARNDVTGDWMQSKPNSEQFEKNFDLIFRKKKEVLPEYELNRSTGNVQKVDHGDTTNTQE*
Ga0151515_1001339	F046899	N/A	MTDVGVQFNAETNLKATKRKRRIDMSNTSNFSPSARMAIREFESWQMKVFKKNAKKGWRFFNPDAFDRPTPRSAREAWGAPYKQDNFEKNEDRNSKIMFAVVVAILLLLSVI*
Ga0151515_1001340	F033405	GGAG	MNSKKTDEQIIEAVNQYMEKYPNATRNQIVLNATGTAIRIRELDKKGLIKLPKALPKGANTKWNGYFNNTSETNTKRQGMKYNV*
Ga0151515_1001342	F006587	AGGAG	MMDKKYEGTGFIIVGFILGALLTWAIMQSIHVQKKYSMNLKCVQGELYEEIRPNFYVKSHLECFEVRTLAP*
Ga0151515_1001344	F012016	AGGCGG	MQETLKQPYAWSTEEFNVNGDLVWSSITQFRPKELSWIRDLPNKKHYITITPLYKDEANAEKITGIKSYRESTQRLTEAFNGL*
Ga0151515_1001352	F029418	AGGAGG	MTQHQINEEKKRKFEEDIIEVAVAEYYEYVETHNRTRSEKDAKMFYDAMRLGIVRGINFATNQYMQSLKNFEEKKNGDN*
Ga0151515_1001353	F031359	GGAG	MVTTKKEKQYIVEQVVVTGYVIHTNGRKTPFAFNKDDLKPNDLLGIFDGVRRIFK*
Ga0151515_1001354	F080877	GGA	MSDLERDLDPPEPQEPVRIKSWWIGVKWEDGRIEEIALPEAFRQAGSDIEGFLDEVEYEYNRDILEHQAQKYGDPDGDY*
Ga0151515_1001355	F043777	AGG	MKLINGTEMIDNSPNEKAGELAEAIYDDVLFILDIEHKCIQDDEDGNTSNTEYGQDLFNGIYEQCMNYFERETT*
Ga0151515_100139	F088231	AGG	MAKMTIEELIKEFSNEQGFQFGIDIVMKSLRPGALYGLSASGGTFEIVSWDESNELPPPSSQEIRDEYIRHQTIKEFLDSIKNYEELYRKLA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10013

Overview

Ecosystem & Geography

Associated Families

Sequences