Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10084 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10084 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	38419
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (75.00%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

38419

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (75.00%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F004760	Metagenome / Metatranscriptome	424	N
F007467	Metagenome / Metatranscriptome	350	Y
F010603	Metagenome / Metatranscriptome	301	Y
F020886	Metagenome / Metatranscriptome	221	N
F043233	Metagenome / Metatranscriptome	156	N
F065530	Metagenome / Metatranscriptome	127	Y
F074558	Metagenome / Metatranscriptome	119	Y
F085343	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1008415	F003962	AGG	LKVAHQFITLLQQENAKLHGVVRLLGGLVDDMEANCSYEVFEAQWEGLTNYVKGLSEFFSTHQKALQSLQEACPAVWDQDEVDET*
Ga0151515_100842	F001459	N/A	MRKLKAALAFIRDQEWINEPKWVDEDEKAWTGFLSTPTGKKLSLILLNLTLRQNASAVMKKHDVLADACGYAKGFRGCVATLESLASQKLNSAVPGYGDGSDEPVAE*
Ga0151515_1008429	F003304	GGA	MEGRKMKKALVTQAFGDEWKKILDLTRPRMEAYCQRHKIDFIALEKPLTEPVQYTKSAIGNIMATKGYDQVTFVDSDVLITKDCPDIGEDAGVFCAFDEGAFLDRKLAMGKLAGAFGAIIDPRFYVNTGVFVISSKAVGALSMPPLGLLPNHFAEQTWMNIMVHIWNIPLTELDPVYNCMTSVELHFGLDRYKDAMCIHYAGQSNDLTRLSNQIKADDAKLVELGR*
Ga0151515_1008431	F002009	N/A	MEKMTAPTIAEMGDEAAAITWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRCLFTLAQIRKEVTRL*
Ga0151515_1008436	F007467	N/A	MTDLEAWNKFEDGLKNVTSMEEAIAWVKKNQKIVEKLTIRAMIRKFNDDISKSNKAWRN*
Ga0151515_1008438	F085343	N/A	MALFKVQSFYMKAITMIAVTAMLMASVMAEDDETEMNDFVAGVYHGGGSVHRAGNVLMTEEGLIFKSGSRFIYQDGRVCQHVGSTYIREDNSVVVRAGNAFVSNDGLTEKVASCYIGPVNSFTAGSTTVRQGWATR*
Ga0151515_1008441	F074558	AGG	MPAITQAAKDYDAALQQMASNKAIKSDLELQKLQFDLAKARDEQEMSSPSGRSTKAAEIAATLEQDKQKQFGIPIQEGMAQRMTSAGGPGILDATRMQGELDVSGKVAEARKAALMNFAAGEKSLLPNASVDVGGVKQTVLAPEAGKTGADIYGQIYRSQVPRLAETYIAEGYDRDTAVRMASADIRKELVKASTGGKVVLPVGDGGTISYSNEEAERKWRDPQTPKGIKMQLNSIFGQQEEPKAASWIKTRLGR*
Ga0151515_1008450	F020886	GGAGG	VSLDEVADLRDRVANVSERLVRMEERQMTLYSMIERSLAFHGDTANRLSALETLKTKVLAVAGVVGLACSMAWDVLKHRFNG*
Ga0151515_1008456	F010603	AGGAG	MATEFMRNTRKAKNKALRFDSASFANVFEITASSSGGTVNTVATAPASLNVTLNGTSYRIALHT*
Ga0151515_1008457	F004760	AGGA	MPIYEYEDTRNGKVVELEKTVAERDLVPRYLKRFTVPRKLTLVGVGEPLDNPLGVNETNLMKGYYRQEQKLGSRFKSKYTPDSIKRATLRRK*
Ga0151515_100846	F065530	N/A	VIGAILQIIASVLRLIPGWREKRVDKNATEWKNNREAIDRELGSVAWWVRDNKSDNEHIGGS*
Ga0151515_1008460	F043233	N/A	AVGIAKVKLQAETASELKKKVAEYESELAQLRKATTPGSGQPTGPAKTKAFHELSLDEQERELMKMAGEVDRNG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10084

Overview

Ecosystem & Geography

Associated Families

Sequences