Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10374 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10374 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20012
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (22.73%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

20012

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (22.73%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006345	Metagenome / Metatranscriptome	375	Y
F016262	Metagenome / Metatranscriptome	248	Y
F021092	Metagenome / Metatranscriptome	220	N
F023325	Metagenome / Metatranscriptome	210	N
F025232	Metagenome / Metatranscriptome	202	Y
F026511	Metagenome / Metatranscriptome	197	N
F028461	Metagenome	191	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1037411	F028461	N/A	MRKKQSTATYYKNPALQESIIKYYKEKKLNFVVKHSNYNTQIIGSEATLKFIQTEHPTRVFIAYNKIVKDLKESPKTVEILQGEWSTANFDSRNGLKPAFYKKILNLDISSAYPYCLWINKLISQDTFNYLMNMPKTERLPAIGMIAKKSVWITYTGGKAEEWELKEGFYTNVFFYVIQQITDLMAWAADVAGDSFLFYWVDGIFLKPTISKKKLQEITGIFAEQGYYFKYEKVENCNIVRDGDKLLINMIKNGEEKPYQMYDRNLARNFTKVLQALENA*
Ga0151515_1037416	F025232	N/A	MENVNEKILADYRLIVGRLDVMKAEVDQVNRSNWKLRKAFNELLDLYQDELSRRDSTEDSQEVAYYWCEKAGILD*
Ga0151515_1037426	F016262	N/A	MFKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTFLIGAGATGKLISDVAPIAVGLLLQGQSNLFAKEAGKGMIAQAAGTLIKSNFPTLGITGDGYSDSVMMSGTLDTGVDNPMISAVPSSYLGDETSGDSGEMDY*
Ga0151515_1037429	F023325	N/A	MRLVSPLIEYLLVSGKMKQVGSYEGSYTKSVYMPFTSNALIGTSYYMAPDTILNSTNNKITAIELVDSATNTIAPTVPVTDPLSTAQAAQGLFYFCNAKREIISYIPLYSLIRRLNAGKLQFIDSPDPISWHNCFIQFNSLTTAITTANSVWLRVTYSPVEK*
Ga0151515_1037430	F021092	AGTAG	MTDPHYILEYMQDNDLRYFQVANQFNRDVVVSFNDRSLEDGIEKMRKFLSKNTGFHRIKLYTNNDLKANGIPRQEPQVFEVSITGKEFDPPREETKEITGFGVNPGYPSAGGIIGVEQYLSKHEENATLREKIKGLELELQYMRDQHTREIDRMRADHEIALKAAKDSNQMFSQGLGMLMNRMGVGE*
Ga0151515_1037435	F026511	N/A	MKTITDCQTIGESTMITSDCIAIAFKRPTGSNPVNVIGYPLAEGETLTISQNVGDFDKTQYNVVITETTPGASVCHVFRTLILE*
Ga0151515_1037441	F006345	N/A	MNNKTAKQIVNEALNMAISKGCFGLIEVTNIVKALEFLNEQPDVEFGEITEEY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10374

Overview

Ecosystem & Geography

Associated Families

Sequences