Scaffold Ga0151514

Basic Information
Taxon OID	3300011115 Open in IMG/M
Scaffold ID	Ga0151514_10003 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011115 Open in IMG/M

Scaffold ID

Ga0151514_10003 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	160798
Total Scaffold Genes	231 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (15.58%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

160798

Total Scaffold Genes

231 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (15.58%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025686	Metagenome / Metatranscriptome	200	Y
F034854	Metagenome / Metatranscriptome	173	Y
F054683	Metagenome	139	N
F060728	Metagenome	132	N
F074497	Metagenome	119	Y
F078411	Metagenome	116	N
F085381	Metagenome / Metatranscriptome	111	Y
F086833	Metagenome	110	N
F090100	Metagenome	108	N
F092027	Metagenome	107	Y
F098949	Metagenome / Metatranscriptome	103	Y
F104777	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_10003103	F025686	N/A	MTQTRTYIKVTYVALSQWGKPIATAHTEEDLKAGIDEYYGIGTDSKVTYVEWVPFNSKYPDELEGHHVYEVDDFNGGLELERVKVYCVDFYPHTKYEKEI*
Ga0151514_10003117	F090100	N/A	MSKSITLSGNQELQFISDSWEKTVTVYLFDTLSDTRVTLTEFYNGRWNSKSSSHLDKFFELIKINPKIKVAMKKAFSELRTETPVDTFSTTMKCFKRRFIIKVKKLVK*
Ga0151514_10003122	F104777	N/A	MGGNIMKKLILFLIVAVLASCSAPQKGYNYKHHSNRQQIMYKQTKRVNKGKSQLNHQCSPKKHR*
Ga0151514_10003193	F092027	N/A	MENRRIIKVEVPKEIWDADMSIFNCNRSLVRAWMESIQDVISQLEK*
Ga0151514_1000320	F074497	N/A	LTSAIACGQHLTPKRIVFSGDTGIFFTYKQEIELLVKFKQFEGCKLEKAKWERYAMDADLQIERERSAYDHLNGEYDKLLDVSKDFQKKYNDEYITHENTKIKLDDMTDKKNKWVTSTFVTGGVAVIIIAPLVYLLVH*
Ga0151514_1000378	F054683	N/A	MNKTESRKALNKLVFEMVTGLGYEVVDDGDGGRVTFIKPDHKNYHDSIEYHKSRFDVCVLNDTSDKVKEDGETIEWFINIQRKALDI*
Ga0151514_1000379	F085381	N/A	MKTVLEQLMELKDKISAIEIAVCGETICSDGACGCGCDESPVEVEDEGPEFDSAGFSKEDRVVDGQYMVTEDDKYAGHVHLTKAELIDFATRLTERVIESIKKAVTDMELNADDLVTLELNNWSNVIEVELDNNTLSNNVNSEIEDAVCLDVDSISDEIDDIFGDMYLERIS*
Ga0151514_1000381	F078411	N/A	MDYNKHTDEVLERLQAHQVLEILAMANKSISQALTQIQELEHNSMMYLDMRPTREIMDDINALHLHLHFLDSAKSFAKNEIHEIGFYLN*
Ga0151514_1000382	F098949	N/A	MELLKHEIEGQVVENTYTIQHLKEGVLVYKEFIDSSNGKCIDFILRSKDGYEIDDANLVEEVQEFIDNL*
Ga0151514_1000388	F060728	N/A	MQKGRPVVEGSARQARLAARAARVAANGGTVKRGRPSKPKAEVDQVEVEQTEATPEA*
Ga0151514_1000393	F086833	N/A	MSKIAELLGLKAQVAKLENEINNETVTFTKEELIEFTKTISNAVANGVKFELSKKDNFDFTNALYSKKSDVIGGIEVKVSRGRVLNEVVDSIDWVLDDENVESVVETVLEGLGK*
Ga0151514_1000396	F034854	N/A	MTVQELIDQLTELKNEGFGETQLVLSVSDHTDFTYHFDFPGFDVGPVYDESYDWENEDSGFPCEDEEGEELDYVVCEVSI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151514_10003

Overview

Ecosystem & Geography

Associated Families

Sequences