Scaffold Ga0151514

Basic Information
Taxon OID	3300011115 Open in IMG/M
Scaffold ID	Ga0151514_10230 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011115 Open in IMG/M

Scaffold ID

Ga0151514_10230 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	27850
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (75.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

27850

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (75.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F008303	Metagenome / Metatranscriptome	335	Y
F012428	Metagenome	280	Y
F028085	Metagenome	192	Y
F053810	Metagenome / Metatranscriptome	140	Y
F057982	Metagenome	135	N
F075693	Metagenome	118	Y
F088552	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1023010	F075693	AGGAG	MDNEAIQKAWKLMSMHNSELLLENEQLKKQLMRRSLWYSIKRAIKIWRGKE*
Ga0151514_1023023	F088552	N/A	MEKNMSALQPRTLNNQELIKYFAMYMEDNEFGAPVEWQIELLRRFTAVAPDKDFPLRDPNQLDLFS*
Ga0151514_1023028	F053810	N/A	MNLTVRPVDVTHIQQVWPMVEGYIQESMNKGGDFPEWAKGYNLSHVQAFVTSGQWLLLVAVDEERVIHGAMTISFLNYPLHRVAFVTSTGGKFIANPELLEQLKDLVKVHGATKIQAFCRESMVRLLSRAGFEPRNTLVEVLV*
Ga0151514_102303	F028085	GGAGG	MVEALASIIFMAAMLGLGAIFFVIVCAMIGWMIYTTQNGGDDE*
Ga0151514_1023031	F012428	N/A	MLQNRSAPNIPQAPKEYDQSYMNSFSNVIRLFFNTINTVQQLNLAALNLDIRTLPTDEDYDSLRVGDVYRDTEGGTLQTGTNVLRIKVPVDLTGVSGLGAVGSVGPVGGTITRNLTGVSGSGALGTVTP*
Ga0151514_102304	F057982	GGAGG	MNEFKYRITYNNGNFADWDSMQKELAWAYKWGIFLYAIRLNIGAWRGGHKSFKYWLYVLRREPKITRERT*
Ga0151514_102306	F002420	AGGAG	MTFRETTVKYIKDILRPKTIYEVICAELQEAHLRKLEAETAAEYADAAIKYNSRRIERLKQRLFEHAEDT*
Ga0151514_102309	F008303	AGGGGG	MIDRLILSAVLGTVGFNGLYPDPPPPLTLKQKAKERSISNMCDRKPKSKAAKDLCKRWKEQRNG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151514_10230

Overview

Ecosystem & Geography

Associated Families

Sequences