Scaffold Ga0151514_11169

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151514_11169

Scaffold Ga0151514_11169

Overview

Basic Information
Taxon OID	3300011115 Open in IMG/M
Scaffold ID	Ga0151514_11169 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	10015
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004788	Metagenome / Metatranscriptome	423	Y
F008614	Metagenome / Metatranscriptome	330	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1116911	F004788	AGG	MNGFEILIQQADEKIEQLKEYLAEGKAESFEDYKKLCGEVRGLLIMRGYTLDLKQRLENSDD*
Ga0151514_111694	F008614	AGGAG	MMQTDVRAVHAEATGTVVSNRTRVKAYHCISGGTAGDVIYRDGGSGGTIRLQFNIGTGTQPVALLIPGEGILFTTDVHVTLPASAKITTFYG*

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