NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151516_10045

Scaffold Ga0151516_10045


Overview

Basic Information
Taxon OID3300011116 Open in IMG/M
Scaffold IDGa0151516_10045 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)63039
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (90.48%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006622Metagenome368Y
F017452Metagenome240Y
F042223Metagenome158Y
F052582Metagenome142Y
F083882Metagenome / Metatranscriptome112N
F085600Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0151516_1004517F042223AGGAGMAFTRSADGIAKQGKTKGKNLGDSGPTVGEMSGGKGKGGGKTNANMKAMGRNLAKIAAQKRG*
Ga0151516_1004526F085600AGGAGMGMQTDTRGATCPVSTDTTAYNGRTRFKGLWYSATGATTIVIKDGATTLFTFTIGAAGVSSIWIPGEGVICSTSLVVSVGATCAAVAFYG*
Ga0151516_1004537F083882AGGAGMQMMPNVDADIPLPASATEAMPPLSPKEEIEMRARTVKMISDLNGNPIEPTPEHKGQARELMEKVVANKTTPELANYPNETIAYLAGMVATYDHMIVRELADFKLYVVNKLVAETENPNSTVRLGAIKALGDVDGVDAFKKRTEVTHKQQSLEEVEKELLETLAKLEKRTIDVQAKVIRSEDNA*
Ga0151516_1004567F052582GGAGVSKSKTPEPLYRQFTPEEDRGKTRVSKYYRVNQNMDALGTGLHPYNIECNLRIDFDLDGGIYKVEWSNKVLGERK*
Ga0151516_1004568F017452AGGAGMIHTEEDDEFERIAHENAMKSGQPYHYDVFVSPSQRNTVLEEVAKEFDKMKSLGDTAASFSAFVRGMKK*
Ga0151516_100457F006622AGGVNEYQKQFDMFLKVFVRLCIAWWVLGLLRFLPDELAGKIVDKLLGMIGL*
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