Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10120 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10120 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	41278
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (75.68%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

41278

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (75.68%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F006841	Metagenome / Metatranscriptome	363	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y
F090403	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1012010	F001106	AGGAG	MSFETLKVAELRKIAEDFAVDTDGLKNKADIVAALTEEGVTWSVYQKTIKDIEKAADEFSEDSEEILPRFNPDAQPENTLLVRMTRENYRYDILNYTFTKEHPFVAMTSEDAQEIFDKEEGFRLATPKEVQEYYA*
Ga0151516_1012011	F058150	N/A	MEILVGSNSPITHKVFWQGQLTDSDSLPVVKLYDITEDPAVSPPINPGTILATLTPIKSEVDAGTYIVYIPVSYTTRQRQFRLNWSYTVGSVSTEKNHKVFVQTPYTDMSQAIDALGLGSDFSDPNSKSYAELCNAERYARKLIEAYTQQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYQNDILLLNTLTNVNNWNYNTIISESGFGIRVNRANMLDNTVYTANGMVPPTINDTWGGSFAVGSTYRVQGKFGWEEVPDEIDLACIELMRDYFSKDKVWRNKYMKSIQTFDWKFEYNSGTYSGTGNLYADQILLPYVINKMVVI*
Ga0151516_1012012	F056615	N/A	MYDLVDSVMPMFLDVYKQFDLQDPDTGSIKKEWQFDRTVPCSAKGIISNSSTGRVGDKQVMSNKYSNDQVLQIRTSEKITLREKITNIRDQEGNVIWEELNFPSNTPTVFELLGITPMTDPFGGVLGYNSTVKRSENQIIGQ*
Ga0151516_1012013	F035307	AGAAG	MAGTKGTILRDSTVAQISAAVYYHAQVVSKLTTNKAFEKKFQSVIFKQIDQDFGLYVDAQARMNPKSLHHVYEWNKTGNKGSRLFDLNVLSTDGLSFKITSKFKPSKSSVPNNFSKRRHVFINKASVMEAGMPLVIRPKSAERLVFETGTGVVYMPKGASVTVTRPGGGKATGRFQIAYAQFFTGNLVNAAIKRSGFQQLFNSALTKAMKVPADVKKVKYSFNPNTLNMQAESAIAAAFGGAL*
Ga0151516_1012014	F000258	GGAGG	MTVDYKADVMLDLRKFLWSQLKANNIFTATDYYSDNIGQEIVPIIPIQQSPEMNQFLSGKKHIVYDKIGMSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDANSYSGISKKFKFFSIFIADISPTSPSEELAGFLSADVILEVKYARHLDTTGRFA*
Ga0151516_1012016	F006841	AGGAGG	LATTIYSVEEVKLQNGTTVLLKPLSIKELRKFMAVIQKTATAADQTESLDVLIEACGVALEKQVPDLVKDRDAFEDALDIPTINRILEVCGGIKMDDESANLTQAAVLAGMN*
Ga0151516_1012031	F090403	GGA	MEGGVMTFNAQYTLETGAAKKRKREEEVAYWNSLNGPVVVKSIKGDDDGE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10120

Overview

Ecosystem & Geography

Associated Families

Sequences