Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10426 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10426 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20744
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (78.05%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

20744

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (78.05%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004344	Metagenome / Metatranscriptome	442	Y
F020909	Metagenome	221	Y
F024097	Metagenome / Metatranscriptome	207	N
F025466	Metagenome / Metatranscriptome	201	Y
F054668	Metagenome / Metatranscriptome	139	Y
F096878	Metagenome / Metatranscriptome	104	N
F101146	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1042612	F020909	AGAAGG	MITKRGKKVRAIAIAVGIILIWQVASNLWWVGIDSPQAEFLGWCWGSMSECVVL*
Ga0151516_1042620	F025466	AGGA	MMFDKVKIEAVVKTYLRAAAAAVAALYLADPNQPVKNYLVAGLAAVAGPVLKALDSKSTEFGRGSK*
Ga0151516_1042623	F054668	AGGAG	MGISTRQVTVTTSPTALVDGTAEAEMVYLHSSTGQCFIGNSDVTTSTGYRMDNGDKLTLDNKANGIWGIAAAGTVTMMVLAIGK*
Ga0151516_1042632	F004344	AGGGGG	MDGLSIKIVTNDDVERVYSLRPRIIVDFEQKYNKGLAKLIGEEQKLEHIYYLAWLALKHNGNIIKPFGGDFLDTLKEVSLVANPNSESTETA*
Ga0151516_1042635	F101146	AGGAG	MAYTVISDREVCGKKKGESITDKELVDAGVSAQALIAANHIKASNAATPSIKPATEGATN
Ga0151516_104266	F024097	GGAG	VANPNGRKGALFETSVMKWLRERGVSAERLTKAGSKDEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAHNYAVARGLEQTPPAYVIIKRRNASIEKSWVVQDLEQWLGTRE*
Ga0151516_104267	F096878	GGCGG	MNRDPLFSVHNSLNGDFVIYLEERDAALDLLEDVVGEVPLRLLEGIQSLILHDLKSIESARLMDKARSAVPDLAIKLASISESEALTLAEQLITAVKVARAMRSQPMPTKLELVK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10426

Overview

Ecosystem & Geography

Associated Families

Sequences