Scaffold Ga0151516_10432

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151516_10432

Scaffold Ga0151516_10432

Overview

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10432 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	20653
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (78.38%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000763	Metagenome / Metatranscriptome	901	Y
F002934	Metagenome / Metatranscriptome	519	Y
F007223	Metagenome	355	Y
F013890	Metagenome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1043227	F013890	AGGA	MGFVEYFDETTGVWTNIEDVPLFDTINCQLCNEPTEAHDIVAEIKFHNDQPVVGAWQCRKCKAVNG*
Ga0151516_1043235	F000763	AGGAG	MKNPIVLAAGAFLAAWSATNFDIDYRAILFAVLSGVFGYATPKK*
Ga0151516_104325	F007223	GGAG	MFDPSLGDAVVMILLAAIYFHLGRIAGHRVGYLKGRKAVRDYYESRDKVRV*
Ga0151516_104329	F002934	AGGAG	MNMKHPTVIAVGAFLAVWGTTSNFDLNYRSILGAIVAGVFGYASPKK*

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