Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10435 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10435 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20555
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (23.26%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

20555

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (23.26%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036214	Metagenome	170	Y
F038601	Metagenome / Metatranscriptome	165	Y
F056571	Metagenome	137	N
F082606	Metagenome	113	N
F097251	Metagenome / Metatranscriptome	104	N
F101081	Metagenome	102	N
F104787	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1043516	F082606	N/A	MSLVVLTAQCSGIVVSTIPTGQKTYKMSPNGRGVRVERTLWRFNPGMPCYVRGWPQHEVTIIDKVEGCTWPTYLVQRFDTGATYKVSQLYLSKRPIENR*
Ga0151516_1043518	F036214	N/A	MDHDAWEWMQLKPDPTSAFNIEKEARRLEQTPNAGPIAAQLFRAWNMQQTLLQQATNRIAALELQVMEHERQAGT*
Ga0151516_1043519	F097251	N/A	MIILTDSQLVELTNRIGQIQRIIDSAQVIKATPAQPKTVTEAATPQPVVKKRKGRARRVMLNAGQVAEIKKRLAAGNESAARIAKDYGVHVTTVNLIKYGKTWKDIQVPA*
Ga0151516_1043526	F101081	GAG	MAGTPVDDRIEAILGKYDLLDPDQYRDAVAELTTYLLTLSNRQIKRSLYHQRLTEKLHLEKCFNHETDDPQPL*
Ga0151516_1043532	F104787	GGAG	MHQAFDLVEVRRLLRRGIDAKHWTLQDLDIPSQGWVITMEDAKRIPGFTPRPYRNLLRDEPTPTERVEIVSPRDFAVVEAPADPVQRGGAPLLPRANGDMAEPFSDAGVQGQEGCVGDETDHGDQAHLGTPWEGRSLGAGELPDDW*
Ga0151516_1043533	F038601	N/A	MKLYSPEAKGKYVWQVADSKTRQVSYSLTTTRTAPPDACYGHPIGKYDDQGLYLTFCPNVGADDPKSPLAARYVVHPMATAERDRSDKERMWREF*
Ga0151516_1043535	F056571	N/A	LARSTAAEVNFRVDTIYGLLTEGQSRGQIVQFAANQWKCSARQADEYIQRARIRLEEDAAMTRPAWIAEALGRLRTYEQSAYRRGQTQVAINAVQLQAKLIGLET*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10435

Overview

Ecosystem & Geography

Associated Families

Sequences