NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0151516_10521

Scaffold Ga0151516_10521


Overview

Basic Information
Taxon OID3300011116 Open in IMG/M
Scaffold IDGa0151516_10521 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)18673
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (68.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027491Metagenome / Metatranscriptome194N
F034115Metagenome / Metatranscriptome175Y
F071159Metagenome / Metatranscriptome122Y
F077217Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0151516_1052116F034115N/AMENKMREFAEVYLDLTRAIKRLHEAKLKQDHVNAYLISCDVTDFAQELEDVLQRDANIQ*
Ga0151516_1052129F027491N/AMEMTMDDLQELHNEMMAEQERLEIALDKAEDGDMLTLAEIDLIRFHCGLPNKRRVNPVLSAITDDFSNIFGGKQ*
Ga0151516_1052131F077217AGGAGMNHLIKDFIDQKYTVKTYQERGYDEDVPIIGFCPDDLETVIKTVVQACADRVNSPKDREAVLQLL*
Ga0151516_1052141F071159GGAGMIYKMLPKQQNEQQIFARMDDDGLCRVTCVAENPEFQEYLKNGGQLEDADGNLMTAEQAKAFVATLS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.