Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10573 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10573 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	17526
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (62.50%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

17526

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (62.50%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F002826	Metagenome / Metatranscriptome	527	Y
F004010	Metagenome / Metatranscriptome	457	Y
F011208	Metagenome	293	N
F011649	Metagenome	288	Y
F036596	Metagenome / Metatranscriptome	169	Y
F057977	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_105731	F001459	N/A	MRKLKAALAFIRNQEWVNEPKWEDEDEKAWTGFLATPTGQKLSLILLNLTLRQNGSAVMKKSEALADACGYAKGFRGCVATLESLASQKLNSAIPGYGDGSDEPVAD*
Ga0151516_1057312	F011208	AGGAG	MTEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYQTVAKAQRERWQKWRTENGRPDIKR
Ga0151516_1057314	F057977	N/A	MNANCSYEVFEVQWNSLTEQVKRLSGFFETHQKALQSLQDSIPDVWDTDEVDDES*
Ga0151516_1057321	F002826	N/A	MQVEAKDRLKWAREILSIARNKLVVERDRATHGHAIDMIQIITMVDAASLVCKEVMGDE*
Ga0151516_1057322	F004010	AGGAG	MLGKDVSKNMHELAMDNKKKGKARGAGGTPRSRQQMIAIALSAAGKSSKSPRKFRMRSGS
Ga0151516_105737	F011649	AGG	MDEQGASPSAIEKAKNGREIFSDKIADEIVAACGSGFTLEKAGALVGINANTIKTWASRKPDFARRVETARKKHELSLLRDIELAGAKSWQAKAWMAERIYNHAQPSARLQVSQDVTHGISGNLAQLLAGIAMKKKAQVIDAKAVEVKTAIPIRDNSYYATNGTQTIDTTTEKVLNKTRHRRMKTRKPRAESLAKYTTTPPADPPAPI*
Ga0151516_105739	F036596	GGA	MNKTKTWKIGEECVGGIIQAKVSEGTYFPQGTTVKILIKDWKTKEILDSQVFGRIHESRLESFLHDMTTSYHASNVMEWVKENAFTHNVLVAMEGGNS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10573

Overview

Ecosystem & Geography

Associated Families

Sequences