NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151516_10599

Scaffold Ga0151516_10599


Overview

Basic Information
Taxon OID3300011116 Open in IMG/M
Scaffold IDGa0151516_10599 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)17006
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003112Metagenome / Metatranscriptome506N
F014487Metagenome / Metatranscriptome262Y
F020886Metagenome / Metatranscriptome221N

Sequences

Protein IDFamilyRBSSequence
Ga0151516_1059912F020886GAGGVSLDEISDLKDRIATQSERLARMEERQMQLYAMVERSLAFHGDVANRLSALEHLRTRVLAVAGLIGLVCSMAWDVLKNRFNG*
Ga0151516_1059913F003112GGAMKCLAIWLTNLSLRFLMTRSEYACFKEALKFAVENNNMVKETKYIGKVKHLMSVNRSIKRIVEDGRDRDEVVDAVVHLAVALKYLEGKGRES*
Ga0151516_1059914F014487GAGMPILLITLLLSSCSPKQQANTDLPRYSDMGAAEDAGKVK*
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