NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151516_10891

Scaffold Ga0151516_10891


Overview

Basic Information
Taxon OID3300011116 Open in IMG/M
Scaffold IDGa0151516_10891 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)13254
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028157Metagenome192Y
F033428Metagenome177Y
F041769Metagenome159Y
F051124Metagenome144Y
F085645Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0151516_1089110F041769N/AMNEEAQIRISELSTALATVTEQRDNLEDSLNAAIHELDAHKAHVHQLTATIERLRLHIAQGIEL*
Ga0151516_1089113F033428AGAAGGMSRLEGRLVADRDVSVLAARFKQIDDSCRTAINEISEEAFGAISMTPPTERRVGIARILLEIAEQDGYIDKDLVRSICTLRTGKQYTSAGLALADLSWMDAERVWATFQDIYANRVELEYLPVSNNYIIKENTHG*
Ga0151516_108917F051124N/AMTKRTDPIEEYLNTTGAGWCIKYVLIAVVEDEDSDQSFYIQCLPNQTAAETIGLCEAVSHIQKTKIAQAWIERENETDDE*
Ga0151516_108918F028157N/AMATDSYLDPKFITVMADHDGHARWVAPIDATDIMQAYRTGGIYLLVTLNTEGEITVAFKPGRQWDSTWSPPITVERK*
Ga0151516_108919F085645AGGMTNGAEILTEAHDLVTGPRQQAYSHPYDDYWKVAQLFNNMTGIQLSIKQAVTFMICVKLARIATNDAQGRWHRDSVVDAAGYLACLSMVHEHTDTAHRQAIEWVEHRNGN*
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