NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114922_10302112

Scaffold Ga0114922_10302112


Overview

Basic Information
Taxon OID3300011118 Open in IMG/M
Scaffold IDGa0114922_10302112 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1337
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameAarhus Bay
CoordinatesLat. (o)56.103Long. (o)10.458Alt. (m)Depth (m)27
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037230Metagenome / Metatranscriptome168Y
F061271Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0114922_103021121F061271N/AMIQELDKVVHQWCDDNDRWMYIEYDRDGMVMGLNFMQGDEYECFKKSWCVSDKGLTAFYKQMLYTFAYEQKNVPEHCFINSCMWAYHSAISEYKDNDCK
Ga0114922_103021123F037230N/AMKDLTKEYVNIDWSGICSDFDLDHGDITPDQSFEIDRTLDNINEVLHEFIEQNKPKAHIGQATLTNTEHNVLMVALDHMYEHLSDLKCDLYYSEEENTNLKRIDAVNSLKKLFKK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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