NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114922_11668127

Scaffold Ga0114922_11668127


Overview

Basic Information
Taxon OID3300011118 Open in IMG/M
Scaffold IDGa0114922_11668127 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)511
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameAarhus Bay
CoordinatesLat. (o)56.103Long. (o)10.458Alt. (m)Depth (m)27
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073581Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0114922_116681271F073581GGAMSVSHEEVVKAAQAEQILTSEVFKEAIENLKNEYITHWLNSREID
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Institute for Fundamental Biomedical Research
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