NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0150983_13035815

Scaffold Ga0150983_13035815


Overview

Basic Information
Taxon OID3300011120 Open in IMG/M
Scaffold IDGa0150983_13035815 Open in IMG/M
Source Dataset NameCombined assembly of Microbial Forest Soil metaT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1012
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.532967Long. (o)-72.180244Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002368Metagenome / Metatranscriptome566Y
F040029Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0150983_130358151F002368N/ARYSRMGIQLTPTKIKGSKYLLIPKDLAQLLEIDDKSILNLTIEDTDQGQRLVYSIREKSSSPLQS*
Ga0150983_130358152F040029N/AVALAPEFFVLLGISVFLAASVISALLDRYLPSILQYLFQGAAGAGLGELLLGQGLNGPTRVWAGIVYLAFALSSLVGVNIRLAIVRRGTNIASIFSQTLTVPVVMISALLLSSFLENGGELVFSTASILTIGTAVLVANLSIFGLLREYSKQGTVKSPGLVSLPNSPTPALTGSVSPGFAPHQLSGQEEDWEESPTRKED*
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