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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011120 Open in IMG/M |
| Scaffold ID | Ga0150983_13147695 Open in IMG/M |
| Source Dataset Name | Combined assembly of Microbial Forest Soil metaT |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1653 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Harvard Forest LTER, Petersham, MA, USA | |||||||
| Coordinates | Lat. (o) | 42.532967 | Long. (o) | -72.180244 | Alt. (m) | Depth (m) | 0 to .1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022474 | Metagenome / Metatranscriptome | 214 | Y |
| F029822 | Metagenome / Metatranscriptome | 187 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0150983_131476951 | F022474 | AGGAGG | VKTTLFAATFVVALTLSAAAAQKPQASQHLAGNNETPKMAPSGVPPALCTPCIFYGGDLNTSDENAAGLSDENTLLIPGSSTYGSFNVFSGSSVTVTGILFNVQADANFDPLTASYDVRSGVTEGNGGTSLASGNVSATVAATGRNFLGLNEYSVAVTLTTPLLLGPGEYWFNVTPTCTNGAQDGSCSVGRFFVSNTTQRTNNVFGGAQANYQMYLNSSYFGFTYANWCDSSLGLRPTQCDAMSYG |
| Ga0150983_131476952 | F029822 | N/A | WFLVSAEKTQRRNIVKTTLFAVALVVALSLSAVAANSNKPAASQHKAGNPNAEWIVNNGTPTPPSACHPCLFYGGDINTSDSNAAGMSDENTLLIVGGSSTYGAVTIPEGVTASVYGILFNVQADAAFDPLTASYDVRSGVSEGNGGTSLASGTGPAVVTATGRNFLGLNEYTVSVSWSTPVTLTAGTYWFNATPNCTNTLDGSCFVFRQFVSNTTSLTNNVRGAWQPIHEMYLNSSFFGFTWANWCDSSLGFNAHQCAGMSFGLRGTQQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |