NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0150983_13598700

Scaffold Ga0150983_13598700


Overview

Basic Information
Taxon OID3300011120 Open in IMG/M
Scaffold IDGa0150983_13598700 Open in IMG/M
Source Dataset NameCombined assembly of Microbial Forest Soil metaT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2583
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.532967Long. (o)-72.180244Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005560Metagenome / Metatranscriptome396N
F054748Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0150983_135987003F054748AGGMTTEDTPTPDASSKRLTEVILKGEEQDAARIAGEIAGGNTQTNDLVDAISETMNIVADLHDVERYTVQQVESCERAAESALNAIRPGLKVEKRKIKGRVMVTSLHGDPHTFDKTLLLTMLELGGFSALDGGEELSPEEVVRNVKSLKPDVLAIPLVTASAVNDLLRTRSLLANSGVKTKLVTYGRGVVKLPSDSQFTAMEEDSLSILSRIAEILIAL*
Ga0150983_135987004F005560N/AMFLRWEILRGWMPAIVFAAVAVAIELLYFNYMVSRGLIDEAFTISLGALRIPLSIALFVSLANAVVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVRAAAIVLTPFTIVLFTPYIVESSWFISAVASASNAVPSLRQTAVNFYTWSFGLARMDYSVKFVVSQLSAAVSSTVVSGLLLWRVKGTRNLMLALRRKK*
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