Scaffold Ga0151654_1007555

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151654_1007555

Scaffold Ga0151654_1007555

Overview

Basic Information
Taxon OID	3300011126 Open in IMG/M
Scaffold ID	Ga0151654_1007555 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Toyama Prefectural University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	887
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location Name	Japan Sea near Toyama Prefecture, JAPAN
Coordinates	Lat. (^o)	37.035	Long. (^o)	137.41472	Alt. (m)		Depth (m)	803
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025170	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151654_10075551	F025170	N/A	SKMDEKQKGFSNYNNIKDLEKKIEDNTLNQQVPEFPDQAFQLETQLDKAQADNQDYFRTNRVGELENYFTPKEDGKIPFVEGSNTLQEGLRRNELAQLQDAGTGKIYQSRLGDEKRSARIRELMLQNPDIRNYMGSYPTNYGFMEGGIASLNVKK*

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