NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151654_1025146

Scaffold Ga0151654_1025146


Overview

Basic Information
Taxon OID3300011126 Open in IMG/M
Scaffold IDGa0151654_1025146 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1639
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.035Long. (o)137.41472Alt. (m)Depth (m)803
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080238Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0151654_10251462F080238AGGAMIEEKSEFVIMLEMLESQPVPERTCSIDDENCESCSG*
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