NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151669_100043

Scaffold Ga0151669_100043


Overview

Basic Information
Taxon OID3300011128 Open in IMG/M
Scaffold IDGa0151669_100043 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42138
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (72.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.04027Long. (o)137.37583Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074038Metagenome120Y
F081771Metagenome114N
F105904Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0151669_10004311F074038AGGAGMDIEKIQQQVADLKNNVSLLEHATVSEFNSDLLTSLHRITDVLDDLQPRVIDPADLSKEAEQKVLNTLSELTARIDNIEAREYTEEGIEDIAKGAIQNMDFSAELDDGSLSVWAR*
Ga0151669_10004313F081771N/AMKMSDFNMMGAVGYRISHTDESQDYPIATIKIAFKLPEGENGRIEMFHVHEALRRMIDKKQIAFDLTLPPTEPPKIWSNNESN*
Ga0151669_10004321F105904GGAMAQVKYATVEILETLTQKAEDSGKNRYPDVGIVNGALLELGYDLEEVKLPITYTLDHNDVEVRAMFVIPGPDPEANERFFLDMEYEDYNNLPYVDLPNNILSDEL*
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