NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151669_100835

Scaffold Ga0151669_100835


Overview

Basic Information
Taxon OID3300011128 Open in IMG/M
Scaffold IDGa0151669_100835 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30620
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (90.70%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.04027Long. (o)137.37583Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020385Metagenome / Metatranscriptome224Y
F030154Metagenome186Y
F048361Metagenome / Metatranscriptome148N
F063160Metagenome / Metatranscriptome130Y
F071405Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0151669_10083511F048361GGAVTRGEEECFVMGKNISASLLFALVLQAAMIVWSISQMRADVDANSSSIVRISGGVKAVDTSSFTQAVQLGKIEENIKGIKESLERMLVVMEKD*
Ga0151669_10083526F071405AGGAMHPSYLGWQIDWPVFVKRPFTSDGKQWETQDHYNWLNRGIGSDAVASLYLQGFIHHNRELEKQAKVGDRLSELTGPQLDKLIGLLNAEVKANTNSNTEYNDKKVKQSKIDAKQRALLRSYLRNNRWIEDKFFEIRDGILED*
Ga0151669_10083540F063160GAGGMNRYNVTMVDELGETFTVEIEICDLVENVTEYVRELYPESSIHYITPKGF*
Ga0151669_10083541F020385GGAGMIKRPSFKEILAQRQEYLDALKSKGDMYALGFLESSFLYHMGDSGLEPLTTAQHSTLAKWKEAAQ*
Ga0151669_10083543F030154AGGAMTYTIATRNTTAQQFVPVLGYILMPLKQAQELAKEYRAAGHDAVAFNTSVGV*
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