NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151669_102292

Scaffold Ga0151669_102292


Overview

Basic Information
Taxon OID3300011128 Open in IMG/M
Scaffold IDGa0151669_102292 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5070
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.04027Long. (o)137.37583Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027807Metagenome / Metatranscriptome193Y
F048234Metagenome148N
F066736Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0151669_1022922F066736AGGVKTKEKFHNNNDGTFTIEKQFDNTPYLERTQMLRSMGAGKLPESWCVGSIPMHLLAQWMKEEKVAWNDIDDRRKLIMRKLNDPDFKKLRVVEGKI*
Ga0151669_1022928F048234N/AMWNFEGRNTMQIAIQISKQVDDWDEFVDELEAIEVTARAEDYDAEAKVVTLLVDQNSIDDHYHPVGGRYPVEFEGRKEFVEEVGICVHSCKWQDHNIINAEEVCATLEGLDYVN*
Ga0151669_1022929F027807GAGGMSIEFVEPKPIKAELIQELDGLVGQLHNLSIRKPMAFHVQEAAMEARMADFLELSEQDFIRGWTDWEEGIQHKEGQSEAYNAGYADCYEYENRGGQ*
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