NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151672_100332

Scaffold Ga0151672_100332


Overview

Basic Information
Taxon OID3300011129 Open in IMG/M
Scaffold IDGa0151672_100332 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12837
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.36555Long. (o)137.72861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F013531Metagenome / Metatranscriptome270Y
F019114Metagenome231Y
F048285Metagenome148N
F097272Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0151672_1003321F002399N/AGQLRKKYGLKDNTPIHKVEQIMTPKHWKAFSTALTFPNGKPTLKEQDNE*
Ga0151672_10033210F019114N/AMQQKETMKQLRDRMISVRDQFYKSRRQRGFMSFWWSSPLHTILVLEVAIANASSKSINFETIVKLLPSSMGSRSTVATVLEDYVARGYMSKDIGKDKRKRVYRMCNDSMQLLNEWFTERQRSLKAVA*
Ga0151672_10033215F097272GGAGGMDLTEFGLDENVAAGNSGGGDRVKPGRYNFEYAGSEELQNDKGWKALKIHFDVEGEIIKVSHAFTMVNPNSAKQVEIGKQSLMKMLNAMGVSSIKNSNELLGKKVEGELVVGEKGYLEIKDDFGNGWKAYGSTKANEHADPKDVLPKENKEEMFPDDVEDDDMPF*
Ga0151672_10033218F013531GGAGGMVNEKKKEQPLLSFQDKDGNPREIFERDLTDATAPLVEEISRDLSAEKQLMEAYELATKTVHHMEAVRKNITNTLEKLEKELPPYKKPIKIDGVTKEIY*
Ga0151672_1003326F048285N/AMKIDPNQLEQATAFILETNKYIYEQAEELAKQHLEAEDNKSFKARVKRYEPDSKETLLHFTDEITAWAECEKNYPLMDFIYKFFQIKKGYYE*
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