NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136713_1004409

Scaffold Ga0136713_1004409


Overview

Basic Information
Taxon OID3300011183 Open in IMG/M
Scaffold IDGa0136713_1004409 Open in IMG/M
Source Dataset NameFreshwater bacterial and archeal communities from Indian Creek, Illinois, USA - JTO22cm metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1756
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Indian Creek, Illinois
CoordinatesLat. (o)41.6655Long. (o)-87.5437Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003194Metagenome501Y
F028996Metagenome189Y
F063241Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0136713_10044091F003194GGAMRVLRGVVYMTKSSGPRTEPWGTPQEEVCQEDRSVSHFTRKQRDDRYDLNQLRTEPWIPNQDERRVIKMSWSIVSKAAERSSRQRHDIFCDPIALMR*
Ga0136713_10044092F063241GGAGGVLEDLQSSRKRFGLKHREGDLCWSLSESEGRKEKAECHLRRGDGLGNKRK*
Ga0136713_10044096F028996GAGMRSKTLMSKINLQRGKLTVENRKSREKKRICSEVSVNSPGNPWSQSRRRNGRLWWEGFAEKESFKPGVKE*
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