NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136597_1029322

Scaffold Ga0136597_1029322


Overview

Basic Information
Taxon OID3300011185 Open in IMG/M
Scaffold IDGa0136597_1029322 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1166
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007732Metagenome346Y
F065262Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0136597_10293222F065262N/AMDENDELAKANELCGEDETPTVNGIELDSVVGVAHAFEYLRESYNAGDIAVRDSEDLLIIQSRQSHFEHMDALLRAQKQGHISIQLITAGTTAAGDPCLTIEVVGGDDVAEQ*
Ga0136597_10293223F007732N/AMDGIIASSTEALHGDYADLKSQTPSGYAPHGLAGIIVNDCNIICGNCATDEELADNDNGAIFGNSEWDYPAPVCEYCEKPLNVNLLVHKSYDPELHFRLRMTEELGGFADRDCLTIDEIGEKAAERAAEIGRDYA
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