NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136597_1048730

Scaffold Ga0136597_1048730


Overview

Basic Information
Taxon OID3300011185 Open in IMG/M
Scaffold IDGa0136597_1048730 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)846
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007407Metagenome351N
F007738Metagenome345Y
F033324Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0136597_10487301F007407GGTGGMTTRDTRKAFLKLLDDTWPGVRSEFVAAMKDVQSQADMKALESAIARGDVDAAFRALRFDAADLFKTDTAITAAMNAGGNYQMGAFQHATRR
Ga0136597_10487302F033324AGGTGGMTDTAKRMMAAASTEAHFAAAHAAMPLEARKAELLAKMRWMHYNASIAQGFSQEDAFELCLATVEYE*
Ga0136597_10487303F007738N/AADITADVQAAYVEAGIAAGNGTGAPIVTINRPGTPSGPEWNPTPGAPVVHTFTAKPAAKAYTQRTGLALGAGELVYSLVNIGVTIAPSTSDVLTVGGVNYPVQEVIVMDSAGYVISWLVKVAK*
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