NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0136596_1001265

Scaffold Ga0136596_1001265


Overview

Basic Information
Taxon OID3300011187 Open in IMG/M
Scaffold IDGa0136596_1001265 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11568
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026883Metagenome / Metatranscriptome196Y
F070731Metagenome122Y
F087244Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0136596_100126515F087244N/AMPLPHFTQISNVGSPGGPGTLPDEVVYLNLFEVTFILPVILQAQGRDPILLLENATKIDLNAANLTAFDIQSVTQRYKYSTREFLTTPTKTSGEVNIPFQVNVNQEGAMETWNTMKAWYDLVFNSQNGSLHYKSDLIGTIIVNQHDKKGVVLRRVTFQNVQMKKLDGYDLDWSSNDIIKEVTANFVWDYFIDEYIDQNFTINPPLVSGY*
Ga0136596_100126517F026883N/AMPLKHILKNKLMLQKHFHLQEYSIDSWPFWMFEENIKIVNEIVEEEEKNQGKQEQQQSSNFDANSMMKNAQSMTNNIPKPKY*
Ga0136596_100126519F070731N/AIYIENNPIYNLINTFIFKPKTDSFMIEDFIDYEIVRNGDTVMLDRLQTFIRDNDLEMPDLDEIKKHYKIIE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.