NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136596_1038146

Scaffold Ga0136596_1038146


Overview

Basic Information
Taxon OID3300011187 Open in IMG/M
Scaffold IDGa0136596_1038146 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1061
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014932Metagenome258N
F081967Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0136596_10381461F014932N/AMQQEQNLGLLLSEFQEGVKSPSLKNYKTTLETGLKILELASYDLPVLNDIFKYNQGFNDLCSKVESYLTTNVHFNYYRYTRHDEQLKEDFNLDISKYDIRSLLILIRCNYIANGAYSIATRSLIESFEYI
Ga0136596_10381463F081967N/APLVKKLHNVLLAVRHQVITMQDFEKLIAEYPEVDKLKNIGKESKLNGTLLTVQFYNNGSLELTVILSEGVLYKFKK*
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