NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136587_1002595

Scaffold Ga0136587_1002595


Overview

Basic Information
Taxon OID3300011188 Open in IMG/M
Scaffold IDGa0136587_1002595 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #563
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4726
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033647Metagenome177Y
F046861Metagenome150Y
F054483Metagenome139N
F074456Metagenome119N
F100124Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0136587_100259514F074456N/AMEKHTNLGDEIFTMNEPDTSWHSTLVGVVVMIAVTFIIYVVMSLIS*
Ga0136587_100259515F033647N/AMTKQEQKDAAWKAYRAIRVPAFKAFKAIEEPAWKAYEAELARIDNEPDEDIIEVDGKRYQLIK*
Ga0136587_10025954F054483N/AMQEYTSPMTFKKPDLSRFNFTVTGSASEQYGEQVAITAKLLGRPFFQLHKIFEKEGWTLEEITSAYQKATKHSGNCEPKIAWWANRKRRNKVGDN*
Ga0136587_10025955F100124AGAAGMFWNKKEVVEVDGLPITLSKRQAFNRFTGAITSRFLAYKDGDEWRGLVGYEQFREEMDETRKRQELILDHLKLKYVPETETKEPAKLVERTNYLTVNSGNVPSWTDWVVSEGSGCDQTPTPPKKKGRSKKK*
Ga0136587_10025959F046861N/AMKSFEQYLEDRCFELYPEILDDDMPDFFEVWLERQGVEGLLIYAEGWGRHIKNTILREVTNLTK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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