NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136558_1170758

Scaffold Ga0136558_1170758


Overview

Basic Information
Taxon OID3300011189 Open in IMG/M
Scaffold IDGa0136558_1170758 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #833
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)503
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001551Metagenome673Y
F030941Metagenome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0136558_11707581F001551GGAGMIYAQHFSQEEFREWAEDMSPRLITMLDMLRFRLGSAIEISASEYALGRNLGVGKMSEHNIDEWGEVLAVDCFISGIYSRQQAEGVAHEATAI
Ga0136558_11707582F030941N/AALAVLCAFMALPSVLGLLVIFHVFVRRKSAPVDASNRINHLRLVWFAMTREGLFVDLFPWLKNDEYDNVRE*

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