NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151673_100856

Scaffold Ga0151673_100856


Overview

Basic Information
Taxon OID3300011245 Open in IMG/M
Scaffold IDGa0151673_100856 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1994
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.36555Long. (o)137.72861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028553Metagenome191N

Sequences

Protein IDFamilyRBSSequence
Ga0151673_1008563F028553N/ALPVSGNINIDGTSNEPRSELDLYKTFDGRMGSVTPSMGYTTEETKYRDGMADVRNKARTVRLGLDGSTTLGPVDISGNAMGSRTMQDKTYTFPFATFTQGSSSTFSKLGAAAKMGAFDFEINRQKSSGMEPFYSGSIGMNIGDGGRISYSDSSTGEPRIDARYRMDF*
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