NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137489_1009926

Scaffold Ga0137489_1009926


Overview

Basic Information
Taxon OID3300011249 Open in IMG/M
Scaffold IDGa0137489_1009926 Open in IMG/M
Source Dataset NameBasal ice microbial communities from dark ice on Arctic glacier surface, Midre Lovenbreen, Svalbard, Norway (sample 23)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1434
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Unclassified → Unclassified → Unclassified → Basal Ice → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameMidre Lovenbreen Svalbard, Norway
CoordinatesLat. (o)79.48416667Long. (o)12.09222222Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079536Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0137489_10099262F079536N/AMDSPIPAVGSGHANDVMLKQLGEVTVDASRLEHLAVEIARNLKIDAGTPDAVAVLRRADAVPPPWSTVTSKDIAAWASSTGRLLEIRDRMFEASGGSRFAGSRGDTIATESADGTVFPADEEYLARYLKRLERQLAAGAELQSRLDYHDENGQRWPLVTLYSQRDSGENTEQPPMRLPAEWTRWLSA*
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