NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151671_1004508

Scaffold Ga0151671_1004508


Overview

Basic Information
Taxon OID3300011253 Open in IMG/M
Scaffold IDGa0151671_1004508 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16430
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.04027Long. (o)137.37583Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010393Metagenome / Metatranscriptome304N
F017728Metagenome / Metatranscriptome239Y
F028945Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0151671_100450811F017728N/AMQDWQKQILEKEGFKNFPPMYYTTTTNDSVHYGLNMEPVDDISVGDIIEMTRTGKEFLVESITPSGIILKECTTYISFSRSALNERLKRNSAIHKSI*
Ga0151671_100450815F028945N/AMKVRFLKSVSGNGFHYRGNAVVEIHSDEMLTDFLNAGFCEAIAEAPKARAKKAVKKTNTKETR*
Ga0151671_100450818F010393GGAMGTTAERMMSARSKRTGGGSGGAFIGFDEKDIKKEFERAFKELENLHDGVTTAQIRRIARKSLKPMLKGYKDEITNISSGTFKVYRNGGIYAEITKGQLKKSMGIITTRVNRGATFASLQVGPRVKRTFSDPEKGGWFAHFLEYGYLQNGNYKSGIQGFARRARMKQSAGVGNEFKRLMRSFLNKQVKAARI*
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