NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151675_1003956

Scaffold Ga0151675_1003956


Overview

Basic Information
Taxon OID3300011254 Open in IMG/M
Scaffold IDGa0151675_1003956 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5690
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)36.97018Long. (o)137.37008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010393Metagenome / Metatranscriptome304N
F017728Metagenome / Metatranscriptome239Y
F028945Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0151675_10039561F010393GGAMGTTAERMMSARSKRTGGGSGGAFIGFDEKDIKKEFERAFKELENLHDGVTTAQIRRIARKSLKPMVKAYREEAKAGNKRDFVVYRNGGVYAEIKPKTLSKSMGVITTRVNRGATFASLSVGPRVTRSFSDSEKGGWFAHFLEYGYLQNGNYKSGIQGFARRARMKQSAGVGNEFK
Ga0151675_10039564F028945N/AMKVRFLKSVSGNGFHYRVNAVVEIHSDEMLTDFLNAGFCEAIAEAPKARAKKAVKKTNTKETR*
Ga0151675_10039568F017728N/ATTTNDSVHYGLNMEPVDDISVGDIIEMTRTGKEFLVESITPSGIILKECTTYVSFSRSALNERLKRNSAIHKSI*
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