NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151675_1007194

Scaffold Ga0151675_1007194


Overview

Basic Information
Taxon OID3300011254 Open in IMG/M
Scaffold IDGa0151675_1007194 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2347
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM24-C165(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)36.97018Long. (o)137.37008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001702Metagenome649Y
F040177Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0151675_10071942F040177N/AMKKPIKKEIENFKKYVWSFYGRGEGLYKDFFGNNLKMKEVERAIQIRLSNMKLEFDGDSIDREIVRDIIFKMRDPKAQTEHEFKFKIER*
Ga0151675_10071943F001702N/AMNKEQKQIKKVIDRAFSQLHVLSNITWTPYRDEIFNLNKKDEKQHRFNRPSSDFEASVNDCAKMFTVKHIAESLLNFEKWKVKDLLTIKKSCLYSQSVVENYKDKILEAWKDQDLKYLANLDYISLIDWKHYTEILERRSA*

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