NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151677_1007878

Scaffold Ga0151677_1007878


Overview

Basic Information
Taxon OID3300011258 Open in IMG/M
Scaffold IDGa0151677_1007878 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4712
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)36.97018Long. (o)137.37008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016690Metagenome245Y
F036313Metagenome170Y
F037936Metagenome167N
F055189Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0151677_10078782F055189N/AMLDTYKGYTMTTYYVKVEATLYYDRNYEIEADDELKAGEIAEELAEREWNDNGNDIDFRRDWEYGHATHEFIYAEESY*
Ga0151677_10078786F036313N/AMSDDVIAKGSRYVLEKVTNLKEGSCVLTSMATNEVISSYVKWHDGLNDMAKREYEDTLLDIKEYTYINDKIREY*
Ga0151677_10078788F016690GGAGMNKFDGVLIFLLGIPITLMAWITLSEEEGYYMSEAINQGFPLGIMFVGLIGAMGLTLLMTGLFIIHHYRNN*
Ga0151677_10078789F037936AGGAGMVGNKIRKGKIWCKTNVKKHFGSNYNHKPLRSNWIQMVKDHDEPLEVYVSRKNELEAKMFKEALTKGKLSNVGHSDNSKAIQMINDMLNGV*
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