NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151677_1040966

Scaffold Ga0151677_1040966


Overview

Basic Information
Taxon OID3300011258 Open in IMG/M
Scaffold IDGa0151677_1040966 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3109
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)36.97018Long. (o)137.37008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039126Metagenome164N
F051146Metagenome / Metatranscriptome144N
F062776Metagenome / Metatranscriptome130Y
F097389Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0151677_10409663F039126N/AMQQVCGYEKPTKNQWGKIYAAAKQLHEAGYEPTDIPVIAENLVKTYGVGALTPQGIVNNVHLVKGARTATNKDVNKAMDQKALEDWANDN*
Ga0151677_10409665F051146N/AMDKKEFLYWCQWLKVRWPNAKLDDFTVKSLYKDFEIFDDDVFGKVLLDYFDSGNEFLDWSKIKKRCKEYQTQVFSEKAQQIREQKSLEDKAEDPPSSLQSYLKMLGYKTFAEAVFNKTKDLYKYGGLRDWQRKLFEPFKDLSYDEAKTKGWRYGIGVELDDRRY*
Ga0151677_10409666F097389GAGGMNTNESIMKQVALKGAIKLTKDKFDIDKDINQQLEVIKNISNNLFNYLKEGMEVAVPTVHAPFDNEPPNEPIMEAELVSFTPKCPECGSDVEDNREKIKSDPKFAKIPVFSCTNKKGCDTGKGYSWATWNEDEFANAVKDISPDLPF*
Ga0151677_10409668F062776GGAGMDKYSNPDVFIVLVGFIGIFFIGALLGEVAVWIAKMLGYEYEEKPNVDFWRRFQDGEVLDADNMFNNVC*
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