NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151677_1047450

Scaffold Ga0151677_1047450


Overview

Basic Information
Taxon OID3300011258 Open in IMG/M
Scaffold IDGa0151677_1047450 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2615
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)36.97018Long. (o)137.37008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062728Metagenome130N
F081285Metagenome114N
F098265Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0151677_10474501F062728N/AMKSHSNLETAVHALDHCKDVLLERSKYGAVDDNFKQISNMGSMITGHKMTEAQVCAFMVALKLSRLSAKDENGQNCNHIDSFIDIIGYSAIALELLNNG
Ga0151677_10474502F098265AGGAGGMALRKITTIRCFANDPDKKATHSNSNWRPYVGKEPGDVVLSKDTRHQISVFANEDGSIDVSISERIADDYSGGESVAANVRQGGMRKIAESIETPAAPKPQMTLDDEVPF*
Ga0151677_10474504F081285GGAGMTEVEQEHAQAIDFTQEKIKRLEADMAYMRKDIEELKTMLASFMKAIADHKEEANDND*
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