NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151677_1175126

Scaffold Ga0151677_1175126


Overview

Basic Information
Taxon OID3300011258 Open in IMG/M
Scaffold IDGa0151677_1175126 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1046
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)36.97018Long. (o)137.37008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F005848Metagenome / Metatranscriptome388Y
F032859Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0151677_11751261F005848N/AMAIPVQRTYTGTPAALNAPVFMVDQQTLQNNFLTLTPNVLQDVVNNPDPAAGLLYQFTLVKNGNATAVRAFSSAISPTTAGRVPIGPVNMSSGSYQWQMTQTAGAVTATTILVRYGSPLN
Ga0151677_11751262F004537GGAVDIMAFFSKPSINNFQVNSGNTPLLYPVRVICPANVTTGISFPDQFLGRAISLKISKQRSANAASYDYNLNGQFQNLAASNFATVDNTIVNYLTIIAGAAGTTLVEAQVIPATRDQIPIEVEI*
Ga0151677_11751263F032859GAGGMSFGGGGSGGSTTVAAHTHNSSLSGDGGSLSSPLTQIDNGSLATRILIGL*
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