NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151661_1011572

Scaffold Ga0151661_1011572


Overview

Basic Information
Taxon OID3300011261 Open in IMG/M
Scaffold IDGa0151661_1011572 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, 0.02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3665
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.36023Long. (o)137.9591Alt. (m)Depth (m)570
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033051Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0151661_10115725F033051N/AMKEVIMIISTIIKSLIKLIDNKKKKKIYQLNNHDIFSTLNRVKKEVANMKFYTHGKYDKVKSKMCLDFTKHKTEVCGARMKVLINVRNIDSMNKDRLKLFILDEQRLMHEEYIKSIAKEWELKGIKSKDIDYIIHLFEKFRYDVVVSFEHRINSIFGNGYNTTNFLLMLAVFEMWAMGIDLLPRDMQTTFESLNGKFKDIKYIK*
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