Scaffold Ga0151620

Basic Information
Taxon OID	3300011268 Open in IMG/M
Scaffold ID	Ga0151620_1000011 Open in IMG/M
Source Dataset Name	Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	70193
Total Scaffold Genes	91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (36.26%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

70193

Total Scaffold Genes

91 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (36.26%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location
Location Name	San Francisco Estuary Delta, California, USA
Coordinates	Lat. (^o)	37.986944	Long. (^o)	-121.523611	Alt. (m)	Depth (m)	.2
Location on Map

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Source Dataset Sampling Location

Location Name

San Francisco Estuary Delta, California, USA

Coordinates

Lat. (^o)

37.986944

Long. (^o)

-121.523611

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F015080	Metagenome / Metatranscriptome	257	Y
F022640	Metagenome / Metatranscriptome	213	Y
F027828	Metagenome / Metatranscriptome	193	Y
F034753	Metagenome	174	Y
F034907	Metagenome / Metatranscriptome	173	Y
F061794	Metagenome / Metatranscriptome	131	Y
F082582	Metagenome / Metatranscriptome	113	Y
F084145	Metagenome / Metatranscriptome	112	Y
F091925	Metagenome / Metatranscriptome	107	Y
F101038	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_100001112	F034753	N/A	MKSLVTELTENYKKQATYWSGSLFADVVNLSTDYKGKWGEELFRDILLKYTDIPVQWDEDSNTSNNDGVYDLFWYLHNGKKLRIEVKTSGRTVSKGVAKGWQHENVYFCDDKWDKMVFIDYDANDVMYITIVNYDQVVTNDMIDLSLFGKNGHCRKNEDGKAKVDFSMRSIENGIAKGVTFKYDFNNPNDDLLGFFLLSKLA*
Ga0151620_100001116	F013631	GGA	MIVSEVFYYTTSRWDWIEGNVNQMWIQEIEESPDCYRYVAVAYNPRKDVGIVMSEPRCYADTLQWVRSWCNSFCILPEFSVAV*
Ga0151620_100001120	F061794	N/A	MPFTKKFPNSGETKHIRVPVVYADLVLELMELFESKFESEKGKHLLKKYISNLS*
Ga0151620_100001122	F027828	GGAG	MNNTNTMLNKVLMTEELLNEKQLTALRDMLYVYKDLQSEVHNYPPEDTLFTQTQFEIFDIFDIK*
Ga0151620_100001124	F091925	N/A	MTQVSFTSGELLDIISTLEEKENALYDADDKHLAAYYMNLGNQFQKIYDKLQEFVPENRVANLVLAVN*
Ga0151620_100001127	F101038	N/A	MQLTNSFPPVDAMVKKIQEFDYVKFCDNVVEFSATAYAIVVGVFSYVWTAFQLWWDDNGEATQVNLIRFVVNVIDFIAAIVIATPKVYRWVKLNSNRLVDALFFQYTFA*
Ga0151620_100001132	F034907	GAG	MITLVIGGVILSTFATMFYLEDRDGGGLYDPDPSASYRHKKSNK*
Ga0151620_100001133	F022640	N/A	MRIAFLIATLALGLRVGLAAHATVNEYQEHQADRFCQIDPNYCK*
Ga0151620_100001136	F082582	N/A	MTVDFSKDVMLGMLRKGATGTQLLDILNVLVPEQIELTREYVCEQLGIADCPENDDEIAAYMAAV*
Ga0151620_100001138	F084145	N/A	MFVICPKSFDLIDAEWFDNFYEAKEEALDWSVELAGEDVIVYEAIEEDEGAYDFQKRYSICA*
Ga0151620_100001143	F015080	N/A	MFDQLQFKAHHLPGAIQGRYKFSNGWSISVVAGLPGCGLYGSVFDGTFEVAIIRPNGNMTEDVIGWNTKDEVSAMMKVLVQL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151620_1000011

Overview

Ecosystem & Geography

Associated Families

Sequences