Scaffold Ga0151620

Basic Information
Taxon OID	3300011268 Open in IMG/M
Scaffold ID	Ga0151620_1000387 Open in IMG/M
Source Dataset Name	Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17372
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (32.14%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

17372

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (32.14%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location
Location Name	San Francisco Estuary Delta, California, USA
Coordinates	Lat. (^o)	37.986944	Long. (^o)	-121.523611	Alt. (m)	Depth (m)	.2
Location on Map

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Source Dataset Sampling Location

Location Name

San Francisco Estuary Delta, California, USA

Coordinates

Lat. (^o)

37.986944

Long. (^o)

-121.523611

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028802	Metagenome	190	Y
F030766	Metagenome / Metatranscriptome	184	Y
F031491	Metagenome / Metatranscriptome	182	Y
F041189	Metagenome / Metatranscriptome	160	Y
F078724	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_100038711	F030766	N/A	MAKKFYAQKDALGFPIAGTMMSGEKVPANLIEIPAQNVVPGAGQVAVAHPGDLRYFVRKDKKGNIIPNSLIISLKKPSGDVYEFKLVKAS*
Ga0151620_100038716	F031491	N/A	MFTTAQPPTRKRLTYQEYKALSQDEQKKYKAEILEEFREHHHKLIENLGISRLDFNMKMPFYDKQARNVVGIFSSEFKKERGFYFELITNEFEPLDSSRTVYKIPYNPNFEEEYELNERGSYLVPLEELRVVNASSIAISGASAILDDVPTKTVAAPKPSVAYKAPGPMEDALYQEMTIRDFFAIHTGKPVSSKSWLNELIKSQK*
Ga0151620_100038718	F041189	N/A	MFSTQGQEVKTGGGLAKSLQPGVVYAHINNGQLRTSNKGDKKSLELYLEGPELENFEGWSIDKDNPEGPKYKGQTGRVSATIWTDEFNNGNVSRNEIMYKLTMIATELGLRDELNRIQAASIEDWATQALNLVKGKKLYWFLKGTEEEYNGKTIIKLSLPKYKFVSAEEDKLDKFDKNNKYHYKALNTRPVSSFEPATDDFEM*
Ga0151620_100038725	F078724	GAG	MIDSLYTKYFQKSRSFLFPALGVKKTANFSPAGTYISINGIVEPEDMKLVCAYKENESEGFKIFEEQMLITNPLFSQVLHIRDYNLYLFDYQTYMDDWFNFMLGKYSKLSPVLKRAIKAYYGDTSSEYRYIESYLFPDKFFEVYAKLLDVDLYMLQKIGELCDPCDLEKETLKIPVEDLEILQKTT*
Ga0151620_100038726	F028802	N/A	MNKSMMLVTGSWGNNKTFKMIPIEANCPYNEAIFDRDSKVLALIGKEKKQSMHMVAKLDDHGDVKTMKIGRRANGKDYAEERKTLETYYEYYIENPEDIKDIVNSFAINADVFDYAQYMEQAYTEAPSSNLITV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151620_1000387

Overview

Ecosystem & Geography

Associated Families

Sequences