NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151620_1008297

Scaffold Ga0151620_1008297


Overview

Basic Information
Taxon OID3300011268 Open in IMG/M
Scaffold IDGa0151620_1008297 Open in IMG/M
Source Dataset NameSub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3756
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location
Location NameSan Francisco Estuary Delta, California, USA
CoordinatesLat. (o)37.986944Long. (o)-121.523611Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027496Metagenome / Metatranscriptome194N
F031464Metagenome / Metatranscriptome182N
F039106Metagenome / Metatranscriptome164N

Sequences

Protein IDFamilyRBSSequence
Ga0151620_10082973F039106GGAMIQLYFNGKPCEIVSRDSADGTVCIRYASDHPNWPFPNYTWVNPSVLSKLRQSQKQKALEGIEEAPF*
Ga0151620_10082975F027496GAGGMTKELLDELLYLIELQIKANIALALGHADAADKEAEKEHVQYYRLVSLIESMRDDLK*
Ga0151620_10082979F031464GAGMRKRIQPRKRKVNPYVAYLENHGRHATLEQLLEAFPNKTSKQIRDSMSKLVDNYTVDRDIKKDDHQYLISYSLGGYNTRDNTGICWHNPFNLR*
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